[Scons-users] crash using --tree=all,status
Bill Deegan
bill at baddogconsulting.com
Sun Mar 12 18:22:31 EDT 2017
Do you have a simple SConstruct which will cause this issue?
We like to add tests to cover any bugs we fix to make sure they don't get
broken..
On Sun, Mar 12, 2017 at 4:34 PM, Mark Diekhans <markd at kermodei.com> wrote:
>
> I am getting the below error, the attached patched address the problem,
> although it might now be the most desired change::
>
> % scons --tree=all,status >&log
> scons: Reading SConscript files ...
> scons: done reading SConscript files.
> scons: Building targets ...
> /opt/rh/devtoolset-3/root/usr/bin/g++ -o build/sonLib/sonLib_Tests
> -Wl,-rpath=/hive/groups/recon/local/lib build/sonLib/sonLib/tests/allTests.o
> build/sonLib/sonLib/tests/sonLibAlignTest.o build/sonLib/sonLib/tests/sonLibCacheTest.o
> build/sonLib/sonLib/tests/sonLibCommonTest.o build/sonLib/sonLib/tests/sonLibCompressionTest.o
> build/sonLib/sonLib/tests/sonLibConnectivityTests.o
> build/sonLib/sonLib/tests/sonLibDoubleTuplesTest.o
> build/sonLib/sonLib/tests/sonLibEdgeContainerTests.o
> build/sonLib/sonLib/tests/sonLibEulerTest.o build/sonLib/sonLib/tests/sonLibExceptTest.o
> build/sonLib/sonLib/tests/sonLibFileTest.o build/sonLib/sonLib/tests/sonLibGraphTest.o
> build/sonLib/sonLib/tests/sonLibHashTest.o build/sonLib/sonLib/tests/sonLibIntTuplesTest.o
> build/sonLib/sonLib/tests/sonLibListTest.o build/sonLib/sonLib/tests/sonLibPosetAlignmentTest.o
> build/sonLib/sonLib/tests/sonLibRandomTest.o build/sonLib/sonLib/tests/sonLibSetTest.o
> build/sonLib/sonLib/tests/sonLibSortedSetTest.o build/sonLib/sonLib/tests/sonLibStringTest.o
> build/sonLib/sonLib/tests/sonLibTreapTest.o build/sonLib/sonLib/tests/sonLibTreeTest.o
> build/sonLib/sonLib/tests/sonLibTuplesTest.o build/sonLib/sonLib/tests/stMatrixTest.o
> build/sonLib/sonLib/tests/stPhylogenyTest.o build/sonLib/sonLib/tests/stThreadPoolTest.o
> build/sonLib/sonLib/tests/stUnionFindTest.o -Lbuild/sonLib/lib
> -Lmods/sonLib/lib -L/hive/groups/recon/local/lib -lsonlib -lcutest
> -ltokyocabinet -lkyototycoon -lkyotocabinet -lz -lbz2 -lpthread -lm -lstdc++
> /opt/rh/devtoolset-3/root/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/ld:
> cannot find -lsonlib
> /opt/rh/devtoolset-3/root/usr/libexec/gcc/x86_64-redhat-linux/4.9.2/ld:
> cannot find -lcutest
> collect2: error: ld returned 1 exit status
> scons: *** [build/sonLib/sonLib_Tests] Error 1
> E = exists
> R = exists in repository only
> b = implicit builder
> B = explicit builder
> S = side effect
> P = precious
> A = always build
> C = current
> N = no clean
> H = no cache
>
> [ B ]+-output/testbin/sonLib_Tests
> [ B ] +-build/sonLib/sonLib_Tests
> [E B C ] +-build/sonLib/sonLib/tests/allTests.o
> scons: building terminated because of errors.
> AttributeError: 'NoneType' object has no attribute 'get_contents':
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Script/Main.py", line 1346:
> _exec_main(parser, values)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Script/Main.py", line 1309:
> _main(parser)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Script/Main.py", line 1091:
> nodes = _build_targets(fs, options, targets, target_top)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Script/Main.py", line 1283:
> jobs.run(postfunc = jobs_postfunc)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Job.py", line 111:
> self.job.start()
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Job.py", line 218:
> task.postprocess()
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Script/Main.py", line 288:
> tp.display(t)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Script/Main.py", line 419:
> SCons.Util.print_tree(t, func, prune=self.prune, showtags=s)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Util.py", line 288:
> print_tree(children[-1], child_func, prune, idx, margin, visited)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Util.py", line 286:
> print_tree(C, child_func, prune, idx, margin, visited)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Util.py", line 286:
> print_tree(C, child_func, prune, idx, margin, visited)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Util.py", line 260:
> tags.append(' C'[IDX(root.is_up_to_date())])
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Node/FS.py", line 3286:
> if not self.changed(r):
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Node/FS.py", line 3241:
> has_changed = SCons.Node.Node.changed(self, node)
> File "/cluster/home/markd/opt/centos6.0/x86_64/lib/python2.
> 7/site-packages/scons-2.5.1/SCons/Node/__init__.py", line 1464:
> contents = self.get_executor().get_contents()
>
> --- Node/.emacs.bak/__init__.py.~1~ 2017-02-22 20:13:21.411291000
> -0800
> +++ Node/__init__.py 2017-03-12 13:26:33.766542409 -0700
> @@ -1461,9 +1461,9 @@
> if t: Trace(': %s changed' % child)
> result = True
>
> - contents = self.get_executor().get_contents()
> - if self.has_builder():
> + if self.has_builder() and (self.get_executor() is not None):
> import SCons.Util
> + contents = self.get_executor().get_contents()
> newsig = SCons.Util.MD5signature(contents)
> if bi.bactsig != newsig:
> if t: Trace(': bactsig %s != newsig %s' % (bi.bactsig,
> newsig))
>
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>
>
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